5 Session info
## R version 3.4.4 (2018-03-15)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 16.04.4 LTS
##
## Matrix products: default
## BLAS: /usr/lib/openblas-base/libblas.so.3
## LAPACK: /usr/lib/libopenblasp-r0.2.18.so
##
## locale:
## [1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8
## [5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8
## [7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] methods stats graphics grDevices utils datasets base
##
## other attached packages:
## [1] ggplot2_3.3.3 Seurat_3.1.1
##
## loaded via a namespace (and not attached):
## [1] tsne_0.1-3 nlme_3.1-142 bitops_1.0-6
## [4] RcppAnnoy_0.0.14 RColorBrewer_1.1-2 httr_1.4.2
## [7] sctransform_0.2.0 tools_3.4.4 R6_2.5.0
## [10] irlba_2.3.3 KernSmooth_2.23-15 uwot_0.1.4
## [13] DBI_1.1.1 lazyeval_0.2.2 colorspace_2.0-0
## [16] withr_2.4.0 npsurv_0.4-0 gridExtra_2.3
## [19] tidyselect_1.1.0 compiler_3.4.4 plotly_4.9.1
## [22] labeling_0.4.2 bookdown_0.17 caTools_1.17.1.2
## [25] scales_1.1.1 lmtest_0.9-37 ggridges_0.5.1
## [28] pbapply_1.4-3 rappdirs_0.3.1 stringr_1.4.0
## [31] digest_0.6.27 rmarkdown_1.17 R.utils_2.9.0
## [34] pkgconfig_2.0.3 htmltools_0.5.1 bibtex_0.4.2
## [37] htmlwidgets_1.5.3 rlang_0.4.10 rstudioapi_0.13
## [40] farver_2.0.3 generics_0.1.0 zoo_1.8-6
## [43] jsonlite_1.7.2 ica_1.0-2 gtools_3.8.1
## [46] dplyr_1.0.3 R.oo_1.23.0 magrittr_2.0.1
## [49] Matrix_1.2-14 Rcpp_1.0.6 munsell_0.5.0
## [52] ape_5.3 reticulate_1.18 lifecycle_0.2.0
## [55] R.methodsS3_1.7.1 stringi_1.5.3 yaml_2.2.1
## [58] gbRd_0.4-11 MASS_7.3-51.4 gplots_3.0.1.1
## [61] Rtsne_0.15 plyr_1.8.6 grid_3.4.4
## [64] parallel_3.4.4 gdata_2.18.0 listenv_0.7.0
## [67] ggrepel_0.9.0 crayon_1.3.4 lattice_0.20-35
## [70] cowplot_0.9.4 splines_3.4.4 SDMTools_1.1-221.1
## [73] knitr_1.30 pillar_1.4.7 igraph_1.2.6
## [76] reshape2_1.4.4 future.apply_1.3.0 codetools_0.2-15
## [79] leiden_0.3.1 glue_1.4.2 evaluate_0.14
## [82] lsei_1.2-0 metap_1.1 RcppParallel_5.0.2
## [85] data.table_1.13.6 png_0.1-7 vctrs_0.3.6
## [88] Rdpack_0.11-0 tidyr_1.1.2 gtable_0.3.0
## [91] RANN_2.6.1 purrr_0.3.4 future_1.15.0
## [94] xfun_0.19 rsvd_1.0.2 RSpectra_0.16-0
## [97] viridisLite_0.3.0 survival_3.1-7 tibble_3.0.5
## [100] cluster_2.1.0 globals_0.12.4 fitdistrplus_1.0-14
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